| appendIgnoreMass(const double massMono, const double massAve) | ms_modification | |
| appendModifiedResidue(const char residue, const double massMono, const double massAve) | ms_modification | |
| appendProperty(const char *name, const char *value, const char *delimiter, const bool bFirstPlace=false) | ms_customproperty | |
| appendText(const char *line, const bool bFirstPlace=false) | ms_customproperty | |
| clearIgnoreMasses() | ms_modification | |
| clearModifiedResidues() | ms_modification | |
| copyFrom(const ms_modification *src) | ms_modification | |
| matrix_science::ms_customproperty::copyFrom(const ms_customproperty *src) | ms_customproperty | |
| copyMassFile(const ms_masses *massFile) | ms_modification | |
| defaultValues() | ms_modification | |
| delNonEmpty() | ms_customproperty | |
| delProp(const char *name) | ms_customproperty | |
| delPropByNumber(const int index) | ms_customproperty | |
| delPropStart(const char *nameBeginning) | ms_customproperty | |
| findProperty(const char *name, const int startFrom=0) const | ms_customproperty | |
| findPropertyBeginning(const char *nameBeginning, const int startFrom=0) const | ms_customproperty | |
| getClassification() const | ms_modification | |
| getCode() const | ms_modification | |
| getCTerminusMass(const MASS_TYPE massType) const | ms_modification | |
| getDefaultDelimiter() const | ms_customproperty | |
| getDelimiterByNumber(const int index) const | ms_customproperty | |
| getDelta(const MASS_TYPE massType) const | ms_modification | |
| getFromUnimod(const char *modName, const ms_umod_configfile *umod_file) | ms_modification | |
| getIgnoreMass(const MASS_TYPE massType, const int idx) const | ms_modification | |
| getMassFile() const | ms_modification | |
| getModificationType() const | ms_modification | |
| getModifiedResidue(const int n) const | ms_modification | |
| getMonoLinkTitle() const | ms_modification | |
| getNeutralLoss(const MASS_TYPE massType) const | ms_modification | |
| getNeutralLossRequired() const | ms_modification | |
| getNTerminusMass(const MASS_TYPE massType) const | ms_modification | |
| getNumberOfIgnoreMasses() const | ms_modification | |
| getNumberOfModifiedResidues() const | ms_modification | |
| getNumberOfProperties() const | ms_customproperty | |
| getPairsWith() const | ms_modification | |
| getPepNeutralLoss(const MASS_TYPE massType) const | ms_modification | |
| getPreceedingComments() const | ms_customproperty | |
| getPropertyName(const int index) const | ms_customproperty | |
| getPropValStringByName(const char *name) const | ms_customproperty | |
| getPropValStringByNumber(const int index) const | ms_customproperty | |
| getReqPepNeutralLoss(const MASS_TYPE massType) const | ms_modification | |
| getResidueMass(const MASS_TYPE massType, const char residue) const | ms_modification | |
| getTitle() const | ms_modification | |
| inErrorTolerant() const | ms_modification | |
| inLongList() const | ms_modification | |
| inShortList() const | ms_modification | |
| isGeneratedMonoLinker() const | ms_modification | |
| isHidden() const | ms_modification | |
| isLoopLinker() const | ms_modification | |
| isResidueModified(const char residue) const | ms_modification | |
| isSubstitution() const | ms_modification | |
| ms_customproperty() | ms_customproperty | |
| ms_modification(const ms_masses *massFile=NULL) | ms_modification | |
| ms_modification(const ms_modification &src) | ms_modification | |
| operator=(const ms_modification &right) | ms_modification | |
| setCTerminusMass(const double massMono, const double massAve) | ms_modification | |
| setDefaultDelimiter(const char *delim) | ms_customproperty | |
| setDelta(const double massMono, const double massAve) | ms_modification | |
| setHidden(const bool value) | ms_modification | |
| setInErrorTolerant(const bool value) | ms_modification | |
| setInLongList(const bool value) | ms_modification | |
| setInShortList(const bool value) | ms_modification | |
| setMassFile(const ms_masses *massFile) | ms_modification | |
| setModificationType(const int type) | ms_modification | |
| setNeutralLoss(const ms_vectorDouble massMono, const ms_vectorDouble massAve, const ms_vectorBool required) | ms_modification | |
| setNTerminusMass(const double massMono, const double massAve) | ms_modification | |
| setPepNeutralLoss(const ms_vectorDouble valuesMono, const ms_vectorDouble valuesAve) | ms_modification | |
| setPreceedingComments(const std::string &comments) | ms_customproperty | |
| setPropertyName(const int index, const char *name) | ms_customproperty | |
| setPropValBoolByName(const char *name, const bool value, const bool bFirstPlace=false) | ms_customproperty | |
| setPropValCharByName(const char *name, const char value, const bool bFirstPlace=false) | ms_customproperty | |
| setPropValFloatByName(const char *name, const double value, const bool bFirstPlace=false) | ms_customproperty | |
| setPropValInt64ByName(const char *name, const INT64 value, const bool bFirstPlace=false) | ms_customproperty | |
| setPropValIntByName(const char *name, const int value, const bool bFirstPlace=false) | ms_customproperty | |
| setPropValStringByName(const char *name, const char *value, const bool bFirstPlace=false) | ms_customproperty | |
| setPropValStringByNumber(const int index, const char *value) | ms_customproperty | |
| setReqPepNeutralLoss(const ms_vectorDouble valuesMono, const ms_vectorDouble valuesAve) | ms_modification | |
| setTitle(const char *value) | ms_modification | |
| setTitleSource(const char *unimodName, const char *specString) | ms_modification | |
| uncommentProp(const int index, const char *delimeter=0) | ms_customproperty | |
| ~ms_customproperty() | ms_customproperty | |
| ~ms_modification() | ms_modification | |
1.9.6