| appendErrors(const ms_errors &src) | ms_errors | |
| clearAllErrors() | ms_errors | |
| copyFrom(const ms_errors *right) | ms_errors | |
| createMissingComponents(matrix_science::ms_ms1quant_match *match) const | ms_quant_helper | |
| getErrorHandler() const | ms_errors | |
| getFraction(const int file_index) const | ms_quant_helper | |
| getLastError() const | ms_errors | |
| getLastErrorString() const | ms_errors | |
| isPeptideQualityOK(int q, int p, std::string &reasonStrRef) const | ms_quant_helper | |
| isPeptideQualityOK(const ms_peptide *pep, std::string &resonStrRef) const | ms_quant_helper | |
| isPeptideQuantifiable(int q, int p, const ms_protein *protein, int peptideIndex, std::string &reasonStrRef) const | ms_quant_helper | |
| isValid() const | ms_errors | |
| ms_errors() | ms_errors | |
| ms_quant_helper(const ms_peptidesummary &pepsum, const ms_quant_method &qm, const ms_umod_configfile &umodfile, const int file_index=ms_quant_file_index::file_index_value_not_set) | ms_quant_helper | |
| PEPTIDE_CHARGE_BELOW_PRECURSOR_MIN enum value | ms_quant_helper | |
| PEPTIDE_EXPECT_ABOVE_THRESHOLD enum value | ms_quant_helper | |
| PEPTIDE_HAS_EXCLUDED_FIXEDMOD enum value | ms_quant_helper | |
| PEPTIDE_HAS_EXCLUDED_LOCAL_FIXEDMOD enum value | ms_quant_helper | |
| PEPTIDE_HAS_EXCLUDED_LOCAL_VARMOD enum value | ms_quant_helper | |
| PEPTIDE_HAS_EXCLUDED_VARMOD enum value | ms_quant_helper | |
| PEPTIDE_HAS_NO_EXCLUSIVE_MODS enum value | ms_quant_helper | |
| PEPTIDE_HAS_NO_REQUIRED_FIXEDMOD enum value | ms_quant_helper | |
| PEPTIDE_HAS_NO_REQUIRED_VARMOD enum value | ms_quant_helper | |
| PEPTIDE_HAS_UNMODIFIED_SITE enum value | ms_quant_helper | |
| PEPTIDE_IS_QUANTIFIABLE enum value | ms_quant_helper | |
| PEPTIDE_NOT_UNIQUE enum value | ms_quant_helper | |
| PEPTIDE_QUALITY enum name | ms_quant_helper | |
| PEPTIDE_QUALITY_IS_OK enum value | ms_quant_helper | |
| PEPTIDE_QUALITY_UNAVAILABLE enum value | ms_quant_helper | |
| PEPTIDE_QUANTIFIABILITY enum name | ms_quant_helper | |
| PEPTIDE_QUANTIFIABILITY_UNAVAILABLE enum value | ms_quant_helper | |
| PEPTIDE_SCORE_BELOW_HOMOLOGY_THR enum value | ms_quant_helper | |
| PEPTIDE_SCORE_BELOW_IDENTITY_THR enum value | ms_quant_helper | |
| PEPTIDE_SCORE_BELOW_IDENTITY_THR_NOHOM enum value | ms_quant_helper | |
| PEPTIDE_SCORE_BELOW_SCORE_THR enum value | ms_quant_helper | |
| ~ms_errors() | ms_errors | |
| ~ms_quant_helper() | ms_quant_helper | |
1.9.6