ms_spectral_lib_file Member List

This is the complete list of members for ms_spectral_lib_file, including all inherited members.

appendErrors(const ms_errors &src)	ms_errors
clearAllErrors()	ms_errors
copyFrom(const ms_errors *right)	ms_errors
findEntries(const char *sequence, const char *checksum=0, const char *accession=0, const char *mods=0) const	ms_spectral_lib_file
getAccessionFromNumber(const int number) const	ms_spectral_lib_file
getAllMods() const	ms_spectral_lib_file
getChecksumFromNumber(const int number) const	ms_spectral_lib_file
getEntryFromNumber(const int number) const	ms_spectral_lib_file
getEntryFromNumberAsText(const int number) const	ms_spectral_lib_file
getErrorHandler() const	ms_errors
getFileName() const	ms_spectral_lib_file
getFormat() const	ms_spectral_lib_file
getLastError() const	ms_errors
getLastErrorString() const	ms_errors
getModsFromNumber(const int number) const	ms_spectral_lib_file
getNumEntries() const	ms_spectral_lib_file
getNumResidues() const	ms_spectral_lib_file
getPrecursorChargeFromNumber(const int number) const	ms_spectral_lib_file
getPrecursorMZFromNumber(const int number) const	ms_spectral_lib_file
getQmatch(double minMz, double maxMz) const	ms_spectral_lib_file
getSequenceFromNumber(const int number) const	ms_spectral_lib_file
getStatsInformation() const	ms_spectral_lib_file
isValid() const	ms_errors
ms_errors()	ms_errors
ms_spectral_lib_file(const char *fileName, const char *regexForAccession, const char *cdbFileName=0)	ms_spectral_lib_file
ms_spectral_lib_file(const char *fileName, const char *regexForAccession, const char *cdbFileName, const std::map< std::string, std::string > &modificationAliases)	ms_spectral_lib_file
saveAs(const char *fileName, const bool replaceProteinName=true, ms_spectral_lib::FILE_FORMAT fileFormat=ms_spectral_lib::FORMAT_NIST_MSP, const int startNumber=1, const int endNumber=-1, const ms_spectral_lib_entry::WHAT_TO_ANNOTATE whatToAnnotate=ms_spectral_lib_entry::ANNOTATE_REPLACE_QUESTION_MARKS, const double annotateTol=0.6, const char *annotateTolu="Da", const ms_umod_configfile *unimod=0) const	ms_spectral_lib_file
verifyThatModsAreInUnimod(const ms_umod_configfile &unimod)	ms_spectral_lib_file
~ms_errors()	ms_errors
~ms_spectral_lib_file()	ms_spectral_lib_file