Matrix Science Mascot Parser toolkit
 
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ms_taxonomyrules Member List

This is the complete list of members for ms_taxonomyrules, including all inherited members.

appendGencodeFile(const ms_taxnodesfiles *item)ms_taxonomyrules
appendNoBreakDescLineIf(const char *str)ms_taxonomyrules
appendNodesFile(const ms_taxnodesfiles *item)ms_taxonomyrules
appendPerDbSrcRule(const ms_parserule_plus *item)ms_taxonomyrules
appendPrefixRemove(const char *item)ms_taxonomyrules
appendProperty(const char *name, const char *value, const char *delimiter, const bool bFirstPlace=false)ms_customproperty
appendSpeciesFile(const ms_taxspeciesfiles *item)ms_taxonomyrules
appendStrFile(const ms_taxspeciesfiles *item)ms_taxonomyrules
appendSuffixRemove(const char *item)ms_taxonomyrules
appendText(const char *line, const bool bFirstPlace=false)ms_customproperty
clearDBLevelTaxId()ms_taxonomyrules
clearGencodeFiles()ms_taxonomyrules
clearNoBreakDescLineIf()ms_taxonomyrules
clearNodesFiles()ms_taxonomyrules
clearPerDbSrcRules()ms_taxonomyrules
clearPrefixRemoves()ms_taxonomyrules
clearSpeciesFiles()ms_taxonomyrules
clearSuffixRemoves()ms_taxonomyrules
copyFrom(const ms_taxonomyrules *right)ms_taxonomyrules
matrix_science::ms_customproperty::copyFrom(const ms_customproperty *src)ms_customproperty
defaultValues()ms_taxonomyrules
delNonEmpty()ms_customproperty
delProp(const char *name)ms_customproperty
delPropByNumber(const int index)ms_customproperty
delPropStart(const char *nameBeginning)ms_customproperty
findProperty(const char *name, const int startFrom=0) constms_customproperty
findPropertyBeginning(const char *nameBeginning, const int startFrom=0) constms_customproperty
getAccFromSpeciesLine() constms_taxonomyrules
getDBLevelTaxId() constms_taxonomyrules
getDefaultDelimiter() constms_customproperty
getDefaultRule() constms_taxonomyrules
getDelimiterByNumber(const int index) constms_customproperty
getDescriptionLineSep() constms_taxonomyrules
getDoThisRuleFirst() constms_taxonomyrules
getErrorLevel() constms_taxonomyrules
getGencodeFile(const int index) constms_taxonomyrules
getIdentifier() constms_taxonomyrules
getNoBreakDescLineIf(const int index) constms_taxonomyrules
getNodesFile(const int index) constms_taxonomyrules
getNumberOfGencodeFiles() constms_taxonomyrules
getNumberOfNoBreakDescLineIf() constms_taxonomyrules
getNumberOfNodesFiles() constms_taxonomyrules
getNumberOfPerDbSrcRules() constms_taxonomyrules
getNumberOfPrefixRemoves() constms_taxonomyrules
getNumberOfProperties() constms_customproperty
getNumberOfSpeciesFiles() constms_taxonomyrules
getNumberOfStrFiles() constms_taxonomyrules
getNumberOfSuffixRemoves() constms_taxonomyrules
getPerDbSrcRule(const int index) constms_taxonomyrules
getPreceedingComments() constms_customproperty
getPrefixRemove(const int index) constms_taxonomyrules
getPropertyName(const int index) constms_customproperty
getPropValStringByName(const char *name) constms_customproperty
getPropValStringByNumber(const int index) constms_customproperty
getQuickRefSearch() constms_taxonomyrules
getSpeciesFile(const int index) constms_taxonomyrules
getSpeciesFormatRegex(const TAX_SPECIES_FORMAT format) constms_taxonomyrules
getSrcDatabaseRule() constms_taxonomyrules
getStrFile(const int index) constms_taxonomyrules
getStrRule() constms_taxonomyrules
getSuffixRemove(const int index) constms_taxonomyrules
isConcatRefFileLines() constms_taxonomyrules
isDBLevelTaxId() constms_taxonomyrules
isEnabled() constms_taxonomyrules
isFromRefFile() constms_taxonomyrules
isMitochondrialTranslation() constms_taxonomyrules
isSectionAvailable() constms_taxonomyrules
ms_customproperty()ms_customproperty
ms_taxonomyrules()ms_taxonomyrules
ms_taxonomyrules(const ms_taxonomyrules &src)ms_taxonomyrules
operator=(const ms_taxonomyrules &right)ms_taxonomyrules
setAccFromSpeciesLine(const ms_parserule *src)ms_taxonomyrules
setConcatRefFileLines(const bool flag)ms_taxonomyrules
setDBLevelTaxId(const int value)ms_taxonomyrules
setDefaultDelimiter(const char *delim)ms_customproperty
setDefaultRule(const ms_parserule_plus *src)ms_taxonomyrules
setDescriptionLineSep(const char value)ms_taxonomyrules
setDoThisRuleFirst(const ms_parserule *src)ms_taxonomyrules
setEnabled(const bool flag)ms_taxonomyrules
setErrorLevel(const int value)ms_taxonomyrules
setFromRefFile(const bool flag)ms_taxonomyrules
setIdentifier(const char *str)ms_taxonomyrules
setMitochondrialTranslation(const bool flag)ms_taxonomyrules
setPreceedingComments(const std::string &comments)ms_customproperty
setPropertyName(const int index, const char *name)ms_customproperty
setPropValBoolByName(const char *name, const bool value, const bool bFirstPlace=false)ms_customproperty
setPropValCharByName(const char *name, const char value, const bool bFirstPlace=false)ms_customproperty
setPropValFloatByName(const char *name, const double value, const bool bFirstPlace=false)ms_customproperty
setPropValInt64ByName(const char *name, const INT64 value, const bool bFirstPlace=false)ms_customproperty
setPropValIntByName(const char *name, const int value, const bool bFirstPlace=false)ms_customproperty
setPropValStringByName(const char *name, const char *value, const bool bFirstPlace=false)ms_customproperty
setPropValStringByNumber(const int index, const char *value)ms_customproperty
setQuickRefSearch(const char *str)ms_taxonomyrules
setSectionAvailable(const bool value)ms_taxonomyrules
setSpeciesFormatRegex(const TAX_SPECIES_FORMAT format, const std::string regex)ms_taxonomyrules
setSrcDatabaseRule(const ms_parserule *src)ms_taxonomyrules
setStrRule(const ms_parserule_plus *src)ms_taxonomyrules
uncommentProp(const int index, const char *delimeter=0)ms_customproperty
~ms_customproperty()ms_customproperty
~ms_taxonomyrules()ms_taxonomyrules