The source code for these examples are in the 'examples' directory. For details on how to compile and run these examples see:

Description	Perl	C++	Java	Python	C#
Reading the mascot.dat file	config_mascotdat.pl	config_mascotdat.cpp	config_mascotdat.java	config_mascotdat.py	config_mascotdat.cs
Reading the enzymes file	config_enzymes.pl	config_enzymes.cpp	config_enzymes.java	config_enzymes.py	config_enzymes.cs
Reading the fragmentation rules file	config_fragrules.pl	config_fragrules.cpp	config_fragrules.java	config_fragrules.py	config_fragrules.cs
Reading the mascot.license file	config_license.pl	config_license.cpp	config_license.java	config_license.py	-
Reading the masses file	config_masses.pl	config_masses.cpp	config_masses.java	config_masses.py	config_masses.cs
Reading the modifications from mod_file	config_modfile.pl	config_modfile.cpp	config_modfile.java	config_modfile.py	config_modfile.cs
Determining the computer CPU configuration	config_procs.pl	config_procs.cpp	config_procs.java	config_procs.py	config_procs.cs
Reading the taxonomy file	config_taxonomy.pl	config_taxonomy.cpp	config_taxonomy.java	config_taxonomy.py	config_taxonomy.cs
Reading the quantitation.xml file	config_quantitation.pl	config_quantitation.cpp	config_quantitation.java	config_quantitation.py	config_quantitation.cs