ms_ms1quant_peptide_status.hpp

/*
##############################################################################
# file: ms_ms1quant_peptide_status.hpp
# 'msparser' toolkit
# An extracted ion chromatogram
##############################################################################
# COPYRIGHT NOTICE
# Copyright 1998-2014 Matrix Science Limited  All Rights Reserved.
#
##############################################################################
 * @(#)$Source: parser/inc/ms_ms1quant_peptide_status.hpp $
 * @(#)$Revision: 2dcc5a5c97c2ef1f6d52f0f45adbf5cbce43ce2e | MSPARSER_REL_3_0_0-2024-09-24-0-g93ebaeb4f4 $
 * @(#)$Date: 2022-01-10 16:56:39 +0000 $
##############################################################################
 */
 
#ifndef MS_MS1QUANT_PEPTIDE_STATUS_HPP
#define MS_MS1QUANT_PEPTIDE_STATUS_HPP
 
 
// Includes from the standard template library
#include <string>
 
namespace matrix_science
{
    //=========================================================================
    class ms_ms1quant_peptide_status_body;
    class ms_peptide;
 
 
    class MS_MASCOTRESFILE_API ms_ms1quant_peptide_status :   
        public ms_handle
    {
        public:
 
            enum peptideStatus
            {
                PS_OK = 0,                          
                PS_EXPECTGREATERTHAN = 1,           
                PS_LESSTHANIDENTITY = 2,            
                PS_MINCHARGE = 3,                   
                PS_NOTUNIQUE = 4,                   
                PS_SCORELESSHOMOLOGY = 5,           
                PS_SCORELESSIDENTITY_NOHOMO = 6,    
                PS_SCORELESSTHRESHOLD = 7,          
                PS_EXCLUDE_LOCALDEF = 8,            
                PS_EXCLUDE_MODFILE = 9,             
                PS_EXCLUDE_UNMODIFIED = 10,         
                PS_NOTPARTOFQUANTITATION = 11,      
                PS_DUPLICATESAMEQUERY = 12,         
                PS_NOMATCHINTHISFRACTION = 13,      
                PS_MAX = 14                         
            };
 
            static std::string getXmlCode(peptideStatus code);
 
            static peptideStatus getCodeFromXml(std::string str);
 
            ms_ms1quant_peptide_status();
 
            ms_ms1quant_peptide_status(const ms_ms1quant_peptide_status_body & body);
 
            int getQuery() const;
 
            int getRank() const;
 
            std::string getComponent() const;
 
            peptideStatus getStatus() const;
 
#ifndef SWIG
            ms_ms1quant_peptide_status(
                    int query,
                    int rank,
                    const std::string & component,
                    ms_ms1quant_peptide_status::peptideStatus status);
            ms_ms1quant_peptide_status_body * body();
            const ms_ms1quant_peptide_status_body * body() const;
            void setStatus(const peptideStatus status);
#endif
    };
 // end of quantitation_group
    //=========================================================================
 
} // namespace matrix_science
 
#endif // MS_MS1QUANT_PEPTIDE_STATUS_HPP
 
/*------------------------------- End of File -------------------------------*/