ms_quant_normalisation.hpp

/*
##############################################################################
# file: ms_quant_normalisation.hpp                                           #
# 'msparser' toolkit                                                         #
# Encapsulates normalisation-element from "quantitation.xml"-file            #
##############################################################################
# COPYRIGHT NOTICE                                                           #
# Copyright 1998-2006 Matrix Science Limited  All Rights Reserved.           #
#                                                                            #
##############################################################################
 * @(#)$Source: parser/inc/ms_quant_normalisation.hpp $
 * @(#)$Revision: 1b450440f9c97e1e41d0fc6016a27d68951d4532 | MSPARSER_REL_3_0_0-2024-09-24-0-g93ebaeb4f4 $
 * @(#)$Date: 2018-07-30 16:23:53 +0100 $
##############################################################################
 */
 
#ifndef MS_QUANT_NORMALISATION_HPP
#define MS_QUANT_NORMALISATION_HPP
 
 
// forward declarations
namespace msparser_internal {
    class ms_quant_xmlloader;
}
 
namespace matrix_science {
 
    class ms_xml_schema; // forward declaration
    class ms_quant_normalisation_peptides; // forward declaration
    class ms_quant_normalisation_proteins; // forward declaration
 
 
    class MS_MASCOTRESFILE_API ms_quant_normalisation: public ms_quant_parameters
    {
        friend class msparser_internal::ms_quant_xmlloader;
 
    public:
        ms_quant_normalisation();
 
        ms_quant_normalisation(const ms_quant_normalisation& src);
 
        virtual ~ms_quant_normalisation();
 
        void defaultValues();
 
        void copyFrom(const ms_quant_normalisation* right);
 
#ifndef SWIG
        ms_quant_normalisation& operator=(const ms_quant_normalisation& right);
#endif
        virtual std::string getSchemaType() const;
 
        virtual std::string validateShallow(const ms_xml_schema *pSchemaFileObj) const;
 
        virtual std::string validateDeep(const ms_xml_schema *pSchemaFileObj) const;
 
 
        bool haveMethod() const;
 
        std::string getMethod() const;
 
        void setMethod(const char* value);
 
        void dropMethod();
 
        std::string getMethodSchemaType() const;
 
 
        bool havePeptides() const;
 
        const ms_quant_normalisation_peptides* getPeptides() const;
 
        void setPeptides(const ms_quant_normalisation_peptides* peptides);
 
        void dropPeptides();
 
        std::string getPeptidesSchemaType() const;
 
 
        bool haveProteins() const;
 
        const ms_quant_normalisation_proteins* getProteins() const;
 
        void setProteins(const ms_quant_normalisation_proteins* proteins);
 
        void dropProteins();
 
        std::string getProteinsSchemaType() const;
 
    private:
 
        std::string _method;
        bool _method_set;
 
        ms_quant_normalisation_peptides *_pPeptides;
        bool _peptides_set;
 
        ms_quant_normalisation_proteins *_pProteins;
        bool _proteins_set;
    }; // class ms_quant_normalisation
 // end of config_group
 
} // namespace matrix_science
 
#endif // MS_QUANT_NORMALISATION_HPP
 
/*------------------------------- End of File -------------------------------*/