ms_quant_normalisation_peptide.hpp

/*
##############################################################################
# file: ms_quant_normalisation_peptide.hpp                                   #
# 'msparser' toolkit                                                         #
# Encapsulates peptide-element from "quantitation.xml"-file                  #
##############################################################################
# COPYRIGHT NOTICE                                                           #
# Copyright 1998-2009 Matrix Science Limited  All Rights Reserved.           #
#                                                                            #
##############################################################################
 * @(#)$Source: parser/inc/ms_quant_normalisation_peptide.hpp $
 * @(#)$Revision: 1b450440f9c97e1e41d0fc6016a27d68951d4532 | MSPARSER_REL_3_0_0-2024-09-24-0-g93ebaeb4f4 $
 * @(#)$Date: 2018-07-30 16:23:53 +0100 $
##############################################################################
 */
 
#ifndef MS_QUANT_NORMALISATION_PEPTIDE_HPP
#define MS_QUANT_NORMALISATION_PEPTIDE_HPP
 
 
#include <string>
#include <vector>
 
// forward declarations
namespace msparser_internal {
    class ms_quant_xmlloader;
}
 
namespace matrix_science {
 
    class ms_quant_modgroup; // forward declaration
    class ms_xml_schema; // forward declaration
 
 
    class MS_MASCOTRESFILE_API ms_quant_normalisation_peptide: public ms_xml_IValidatable
    {
        friend class msparser_internal::ms_quant_xmlloader;
 
    public:
        ms_quant_normalisation_peptide();
 
        ms_quant_normalisation_peptide(const ms_quant_normalisation_peptide& src);
 
        virtual ~ms_quant_normalisation_peptide();
 
        void defaultValues();
 
        void copyFrom(const ms_quant_normalisation_peptide* right);
 
#ifndef SWIG
        ms_quant_normalisation_peptide& operator=(const ms_quant_normalisation_peptide& right);
#endif
        virtual std::string getSchemaType() const;
 
        virtual std::string validateShallow(const ms_xml_schema *pSchemaFileObj) const;
 
        virtual std::string validateDeep(const ms_xml_schema *pSchemaFileObj) const;
 
 
        bool haveSequence() const;
 
        std::string getSequence() const;
 
        void setSequence(const char * value);
 
        void dropSequence();
 
        std::string getSequenceSchemaType() const;
 
    private:
 
        std::string _sequence;
        bool _sequence_set;
    }; // class ms_quant_normalisation_peptide
 
    class MS_MASCOTRESFILE_API ms_quant_normalisation_peptides: public ms_xml_IValidatable
    {
        friend class msparser_internal::ms_quant_xmlloader;
 
    public:
        ms_quant_normalisation_peptides();
 
        ms_quant_normalisation_peptides(const ms_quant_normalisation_peptides& src);
 
        virtual ~ms_quant_normalisation_peptides();
 
        void defaultValues();
 
        void copyFrom(const ms_quant_normalisation_peptides* right);
 
#ifndef SWIG
        ms_quant_normalisation_peptides& operator=(const ms_quant_normalisation_peptides& right);
#endif
        virtual std::string getSchemaType() const;
 
        virtual std::string validateShallow(const ms_xml_schema *pSchemaFileObj) const;
 
        virtual std::string validateDeep(const ms_xml_schema *pSchemaFileObj) const;
 
 
        int getNumberOfPeptides() const;
 
        void clearPeptides();
 
        void appendPeptide(const ms_quant_normalisation_peptide* pep);
 
        const ms_quant_normalisation_peptide* getPeptide(const int idx) const;
 
        bool updatePeptide(const int idx, const ms_quant_normalisation_peptide* pep);
 
        bool deletePeptide(const int idx);
 
        std::string getPeptideSchemaType() const;
 
    private:
 
        typedef std::vector< ms_quant_normalisation_peptide* > pep_vector;
        pep_vector _peptides;
    }; // class ms_quant_normalisation_peptides
 // end of config_group
 
} // namespace matrix_science
 
#endif // MS_QUANT_NORMALISATION_PEPTIDE_HPP
 
/*------------------------------- End of File -------------------------------*/