Mascot Server ships with MS2Rescore, which is one of many predictive ML tools for proteomics. Follow this new tutorial if you want to add an integration to a different AI/ML system. https://lnkd.in/gWMW6qSE #proteomics #MassSpec
About us
Matrix Science develops and markets software products which integrate mass spectrometry into bioinformatics. Our interests extend to all aspects of mass spectrometry in the life sciences. Please contact us to discuss: * Developing new applications * Consultancy in mass spectrometry and bioinformatics * Systems analysis and integration Mascot: The trusted reference standard for protein identification by mass spectrometry for 25 years
- Website
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https://www.matrixscience.com/
External link for Matrix Science
- Industry
- Biotechnology Research
- Company size
- 2-10 employees
- Headquarters
- London
- Type
- Privately Held
- Founded
- 1998
Locations
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Primary
Get directions
64 Baker St
London, W1U 7GB, GB
Employees at Matrix Science
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Martin Stuart
Infrastructure Developer at Bloomberg LP
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Alex Day
Software Developer | Python C# C++ | First Class MMath | Passionate About Solving Complex Problems
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Adam Weremczuk
Systems Administrator at Matrix Science
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Laura Shea
Manager, Questionnaires at Contract Testing Inc. | Competitive Intelligence, Quality Research and Analysis, Sensory and Marketing Consulting
Updates
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Agilent have published an application note for recommended MassHunter Qualitative Analysis settings when searching DDA peak lists with Mascot Server. We've added it to a new help page for Agilent instruments. https://lnkd.in/e7mgJvZb #proteomics #MassSpec
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Mascot newsletter, April 2025: ASMS User Meeting registration is now open. Competitive displacement of lipoprotein lipase by GPIHBP1 (Biotech Research & Innovation Centre (BRIC), University of Copenhagen; Department of Biochemistry and Molecular Biology, University of Southern Denmark). MS2PIP models for Thermo instruments. #proteomics #massspec https://lnkd.in/eMR8vXxf
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Sometimes you need a very large sequence database, e.g. search all proteobacteria proteins. Mascot Server has no size limit. Search a database of hundreds of millions of protein sequences without running out of resources. https://lnkd.in/en9RhZZJ #proteomics #MassSpec
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If your computer breaks down, do you know how to restore Mascot? As long as you regularly back up the right directories and files, it's straightfoward and fully described in the online help: https://lnkd.in/eqikT9DZ #proteomics #MassSpec
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Mascot Newsletter, March 2025: 50% more identifications in Thermo Proteome Discoverer. Maternal immune activation imprints translational dysregulation (Pedro R. Cutillas, Juan F Lopez Gimenez). Mascot's ML adapter framework (US HUPO 2025 poster). #proteomics #MassSpec https://lnkd.in/eFua9KvS
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Mascot Distiller provides DDA LFQ for Bruker, Sciex, Thermo and Waters instruments. Retention time alignment ("match between runs"); ion mobility (Bruker TIMS); fractionation; optimised peak detection; visualisation; and more. #proteomics #MassSpec https://lnkd.in/esjAb3V9
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Mascot Newsletter, February 2025: Mascot vs FragPipe: semi-tryptic TMTpro. Characterization of the noncanonical proteome. Mascot Server 3.1 is now available. #proteomics #MassSpec https://lnkd.in/ekdQp2Ex
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Mascot Distiller can now use machine learning to boost sensitivity of protein quantitation. We processed a Thermo Orbitrap DDA LFQ benchmark data set, where Distiller now quantitates 14% more proteins at 1% FDR. #proteomics #MassSpec https://lnkd.in/efeKadHh
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Do you use Thermo Proteome Discoverer with Mascot Server? Mascot Server 3.1 can now send results refined with machine learning directly to PD. PD 3.1: Identify over 20% more proteins. PD 2.4: Identify over 40% more proteins. #proteomics #MassSpec https://lnkd.in/eZ24MmCU