appendIgnoreDupeAccession(const std::string value) | ms_mascotoptions | |
appendProperty(const char *name, const char *value, const char *delimiter, const bool bFirstPlace=false) | ms_customproperty | |
appendReportNumberChoice(const int value) | ms_mascotoptions | |
appendTargetFDRPercentage(const double value, const bool makeDefault=false) | ms_mascotoptions | |
appendText(const char *line, const bool bFirstPlace=false) | ms_customproperty | |
clearIgnoreDupeAccessions() | ms_mascotoptions | |
clearReportNumberChoices() | ms_mascotoptions | |
clearTargetFDRPercentages() | ms_mascotoptions | |
copyFrom(const ms_mascotoptions *right) | ms_mascotoptions | |
matrix_science::ms_customproperty::copyFrom(const ms_customproperty *src) | ms_customproperty | |
DECOY_ALGORITHM enum name | ms_mascotoptions | |
DECOY_ALGORITHM_NONE enum value | ms_mascotoptions | |
DECOY_PEPTIDE_RANDOM enum value | ms_mascotoptions | |
DECOY_PEPTIDE_RANDOM_DIPEP enum value | ms_mascotoptions | |
DECOY_PEPTIDE_REVERSE enum value | ms_mascotoptions | |
DECOY_PEPTIDE_SHUFFLE enum value | ms_mascotoptions | |
DECOY_PROTEIN_BASED_MASK enum value | ms_mascotoptions | |
DECOY_PROTEIN_RANDOM enum value | ms_mascotoptions | |
DECOY_PROTEIN_RANDOM_DIPEP enum value | ms_mascotoptions | |
DECOY_PROTEIN_REVERSE enum value | ms_mascotoptions | |
DECOY_PROTEIN_SHUFFLE enum value | ms_mascotoptions | |
defaultValues() | ms_mascotoptions | |
delNonEmpty() | ms_customproperty | |
delProp(const char *name) | ms_customproperty | |
delPropByNumber(const int index) | ms_customproperty | |
delPropStart(const char *nameBeginning) | ms_customproperty | |
EXEC_AFTER_SEARCH enum name | ms_mascotoptions | |
findProperty(const char *name, const int startFrom=0) const | ms_customproperty | |
findPropertyBeginning(const char *nameBeginning, const int startFrom=0) const | ms_customproperty | |
getCacheDirectory() const | ms_mascotoptions | |
getCentroidWidth() const | ms_mascotoptions | |
getCentroidWidthCount() const | ms_mascotoptions | |
getCompressToolAA() const | ms_mascotoptions | |
getCompressToolCommandLineFasta(DATABASE_TYPE dbType, const std::string &dbname, const std::string &dbpath) const | ms_mascotoptions | |
getCompressToolCommandLineLibrary(const std::string &logfilepath, const std::string &inputfile, const std::string &outputdirectory) const | ms_mascotoptions | |
getCompressToolNA() const | ms_mascotoptions | |
getCompressToolSL() const | ms_mascotoptions | |
getCrawlerNumPeaksPer100Da() const | ms_mascotoptions | |
getCreatePipThreadBlockSize() const | ms_mascotoptions | |
getCreatePipThreads() const | ms_mascotoptions | |
getDechargeFragmentPeaks() const | ms_mascotoptions | |
getDecoyTypeNoEnzyme() const | ms_mascotoptions | |
getDecoyTypeSpecific() const | ms_mascotoptions | |
getDefaultDelimiter() const | ms_customproperty | |
getDelimiterByNumber(const int index) const | ms_customproperty | |
getDisplayNonSignificantMatches() const | ms_mascotoptions | |
getEmailFromTextName() const | ms_mascotoptions | |
getEmailFromUser() const | ms_mascotoptions | |
getEmailPassword() const | ms_mascotoptions | |
getEmailProfile() const | ms_mascotoptions | |
getEmailService() const | ms_mascotoptions | |
getEmailTimeOutPeriod() const | ms_mascotoptions | |
getErrMessageEmailTo() const | ms_mascotoptions | |
getErrorLogFile() const | ms_mascotoptions | |
getErrTolMaxAccessions() const | ms_mascotoptions | |
getExecAfterSearch(const char *szResultsFilePath, std::vector< std::string > &commands, std::vector< std::string > &titles, std::vector< int > &waitfor, std::vector< int > &logging, std::vector< std::string > &additionalFlags, const char *sessionID=0, const char *taskID=0) const | ms_mascotoptions | |
getFeatureTableLength() const | ms_mascotoptions | |
getFeatureTableMinScore() const | ms_mascotoptions | |
getFormVersion() const | ms_mascotoptions | |
getGetSeqBlastAccession() const | ms_mascotoptions | |
getGetSeqJobIdFile() const | ms_mascotoptions | |
getICATFilter() const | ms_mascotoptions | |
getICATHeavy() const | ms_mascotoptions | |
getICATLight() const | ms_mascotoptions | |
getICATQuantitationMethod() const | ms_mascotoptions | |
getIgnoreDupeAccession(const unsigned int index) const | ms_mascotoptions | |
getIgnoreIonsScoreBelow() const | ms_mascotoptions | |
getIntensitySigFigs() const | ms_mascotoptions | |
getInterFileBasePath() const | ms_mascotoptions | |
getInterFileRelPath() const | ms_mascotoptions | |
getIonsDecimalPlaces() const | ms_mascotoptions | |
getLastQueryAscFile() const | ms_mascotoptions | |
getLogoImageFile() const | ms_mascotoptions | |
getMailTempFile() const | ms_mascotoptions | |
getMailTransport() const | ms_mascotoptions | |
getMascNodeCtrlFile() const | ms_mascotoptions | |
getMascotCmdLine() const | ms_mascotoptions | |
getMascotControlFile() const | ms_mascotoptions | |
getMascotFileProcessingThreads() const | ms_mascotoptions | |
getMascotJobIdFile() const | ms_mascotoptions | |
getMascotMessage() const | ms_mascotoptions | |
getMassDecimalPlaces() const | ms_mascotoptions | |
getMaxConcurrentSearches() const | ms_mascotoptions | |
getMaxDatabases() const | ms_mascotoptions | |
getMaxDescriptionLen() const | ms_mascotoptions | |
getMaxEtagMassDelta() const | ms_mascotoptions | |
getMaxEtVarMods() const | ms_mascotoptions | |
getMaxIntactCrosslinkPeptides() const | ms_mascotoptions | |
getMaxNumOfReportBuilderColumnArrangements() const | ms_mascotoptions | |
getMaxNumPeptides() const | ms_mascotoptions | |
getMaxPepModArrangements() const | ms_mascotoptions | |
getMaxPepNumModifiedSites() const | ms_mascotoptions | |
getMaxPepNumVarMods() const | ms_mascotoptions | |
getMaxQueries() const | ms_mascotoptions | |
getMaxSearchesPerUser() const | ms_mascotoptions | |
getMaxSequenceLen() const | ms_mascotoptions | |
getMaxVarMods() const | ms_mascotoptions | |
getMinEtagMassDelta() const | ms_mascotoptions | |
getMinPepLenInPepSummary() const | ms_mascotoptions | |
getMinPepLenInSearch() const | ms_mascotoptions | |
getMonitorEmailCheckFreq() const | ms_mascotoptions | |
getMonitorLogFile() const | ms_mascotoptions | |
getMonitorPidFile() const | ms_mascotoptions | |
getMonitorTestTimeout() const | ms_mascotoptions | |
getMudpit() const | ms_mascotoptions | |
getMudpitSwitch() const | ms_mascotoptions | |
getNoResultsScript() const | ms_mascotoptions | |
getNTIUserGroup() const | ms_mascotoptions | |
getNTMonitorGroup() const | ms_mascotoptions | |
getNumberOfIgnoreDupeAccessions() const | ms_mascotoptions | |
getNumberOfProperties() const | ms_customproperty | |
getNumberOfReportNumberChoices() const | ms_mascotoptions | |
getNumberOfTargetFDRPercentages() const | ms_mascotoptions | |
getPepSearchTool() const | ms_mascotoptions | |
getPepSearchToolCommandLine(const std::string &peptideToleranceUnit, const double &peptideTolerance, const std::string &ionToleranceUnit, const double &ionTolerance, const std::string &libraryDirectoryPath, const std::string &inputFileRelativePath, const std::string &outputFileRelativePath) const | ms_mascotoptions | |
getPercolatorExeFlags(bool anyRetentionTimes, const std::vector< std::string > percolatorFiles, const PERC_EXE_RT rt=PERC_EXE_RT_USE_DEFAULT) const | ms_mascotoptions | |
getPercolatorFeatures() const | ms_mascotoptions | |
getPercolatorMinQueries() const | ms_mascotoptions | |
getPercolatorMinSequences() const | ms_mascotoptions | |
getPercolatorRtFlags(const bool anyRetentionTimes, const bool useRT) const | ms_mascotoptions | |
getPercolatorTargetRankRelativeThreshold() const | ms_mascotoptions | |
getPercolatorTargetRankScoreThreshold() const | ms_mascotoptions | |
getPreceedingComments() const | ms_customproperty | |
getPrecursorCutOutLowerLimit() const | ms_mascotoptions | |
getPrecursorCutOutUpperLimit() const | ms_mascotoptions | |
getPropertyName(const int index) const | ms_customproperty | |
getPropValStringByName(const char *name) const | ms_customproperty | |
getPropValStringByNumber(const int index) const | ms_customproperty | |
getProteinFamilySwitch() const | ms_mascotoptions | |
getProteinsInResultsFile() const | ms_mascotoptions | |
getProxyPassword() const | ms_mascotoptions | |
getProxyServer() const | ms_mascotoptions | |
getProxyType() const | ms_mascotoptions | |
getProxyUsername() const | ms_mascotoptions | |
getReportBuilderColumnArrangement(const int index) const | ms_mascotoptions | |
getReportNumberChoice(const int index) const | ms_mascotoptions | |
getResfileCache() const | ms_mascotoptions | |
getResultsCache() const | ms_mascotoptions | |
getResultsFileFormatVersion() const | ms_mascotoptions | |
getResultsFullURL() const | ms_mascotoptions | |
getResultsFullURL_2() const | ms_mascotoptions | |
getResultsPerlScript() const | ms_mascotoptions | |
getResultsPerlScript_2() const | ms_mascotoptions | |
getReviewColDisplay(const MS_REVIEW_COL index) const | ms_mascotoptions | |
getReviewColWidth(const MS_REVIEW_COL index) const | ms_mascotoptions | |
getSearchLogFile() const | ms_mascotoptions | |
getSearchSubmitAcceptedFileTypes() const | ms_mascotoptions | |
getSearchSubmitDefaultPeptideCharge() const | ms_mascotoptions | |
getSearchSubmitMode() const | ms_mascotoptions | |
getSearchSubmitOutputFormat() const | ms_mascotoptions | |
getSelectSwitch() const | ms_mascotoptions | |
getSendmailPath() const | ms_mascotoptions | |
getShowSubsets() const | ms_mascotoptions | |
getSigThreshold() const | ms_mascotoptions | |
getSiteAnalysisMD10Prob() const | ms_mascotoptions | |
getSortUnassigned() const | ms_mascotoptions | |
getSpectraPerLibraryBlock() const | ms_mascotoptions | |
getSpectrumViewerColourSchemeNames() const | ms_mascotoptions | |
getSpectrumViewerColourSchemeString(const std::string &name) const | ms_mascotoptions | |
getSpectrumViewerDefaultColourSchemeName() const | ms_mascotoptions | |
getSplitDataFileSize() const | ms_mascotoptions | |
getSplitNumberOfQueries() const | ms_mascotoptions | |
getSVGSpectrumSwitch() const | ms_mascotoptions | |
getTargetFDRPercentage(const int index) const | ms_mascotoptions | |
getTaxBrowserUrl() const | ms_mascotoptions | |
getTestDirectory() const | ms_mascotoptions | |
getUniqueJobStartNumber() const | ms_mascotoptions | |
getUnixDirPerm() const | ms_mascotoptions | |
getUnixWebUserGroup() const | ms_mascotoptions | |
getVmemory() const | ms_mascotoptions | |
isAlwaysCreateDat28ResultsFile() const | ms_mascotoptions | |
isAlwaysEnableAutoDecoySearch() const | ms_mascotoptions | |
isAutoSelectCharge() const | ms_mascotoptions | |
isCreateLegacyModAndSubstitutionFiles() const | ms_mascotoptions | |
isDefaultTargetFDRPercentage(const int index) const | ms_mascotoptions | |
isEmailErrorsEnabled() const | ms_mascotoptions | |
isEmailUsersEnabled() const | ms_mascotoptions | |
isForkForUnixApache() const | ms_mascotoptions | |
isInIgnoreDupeAccessionList(const std::string value) const | ms_mascotoptions | |
isIteratePMFIntensities() const | ms_mascotoptions | |
isLabelAll() const | ms_mascotoptions | |
isMatchOppositeCrosslinkPairs() const | ms_mascotoptions | |
isMoveOldDbToOldDir() const | ms_mascotoptions | |
isPercolator() const | ms_mascotoptions | |
isPercolatorUseProteins() const | ms_mascotoptions | |
isPercolatorUseRT() const | ms_mascotoptions | |
isRemoveOldIndexFiles() const | ms_mascotoptions | |
isRequireBoldRed() const | ms_mascotoptions | |
isSaveEveryLastQueryAsc() const | ms_mascotoptions | |
isSaveLastQueryAsc() const | ms_mascotoptions | |
isSectionAvailable() const | ms_mascotoptions | |
isShowAllFromErrorTolerant() const | ms_mascotoptions | |
isShowSubsets() const | ms_mascotoptions | |
isStoreModPermutations() const | ms_mascotoptions | |
isUnixDirPermDefined() const | ms_mascotoptions | |
isUseHTTPProxyForFTP() const | ms_mascotoptions | |
isUseHTTPProxyForHTTPS() const | ms_mascotoptions | |
MASS_DECIMAL_PLACES enum value | ms_mascotoptions | |
MAX_EXEC_AFTER_SEARCH enum value | ms_mascotoptions | |
ms_customproperty() | ms_customproperty | |
ms_mascotoptions() | ms_mascotoptions | |
ms_mascotoptions(const ms_mascotoptions &src) | ms_mascotoptions | |
MS_REVIEW_COL enum name | ms_mascotoptions | |
MS_REVIEW_COL____LAST___ enum value | ms_mascotoptions | |
MS_REVIEW_COL_DATABASE enum value | ms_mascotoptions | |
MS_REVIEW_COL_DURATION enum value | ms_mascotoptions | |
MS_REVIEW_COL_ENZYMEUSED enum value | ms_mascotoptions | |
MS_REVIEW_COL_IPADDRESS enum value | ms_mascotoptions | |
MS_REVIEW_COL_JOB enum value | ms_mascotoptions | |
MS_REVIEW_COL_PEAKLISTDATAFILE enum value | ms_mascotoptions | |
MS_REVIEW_COL_PID enum value | ms_mascotoptions | |
MS_REVIEW_COL_PRIORITY enum value | ms_mascotoptions | |
MS_REVIEW_COL_RESULTS_FILE enum value | ms_mascotoptions | |
MS_REVIEW_COL_SEARCHTYPE enum value | ms_mascotoptions | |
MS_REVIEW_COL_START_TIME enum value | ms_mascotoptions | |
MS_REVIEW_COL_STATUS enum value | ms_mascotoptions | |
MS_REVIEW_COL_TITLE enum value | ms_mascotoptions | |
MS_REVIEW_COL_USEREMAIL enum value | ms_mascotoptions | |
MS_REVIEW_COL_USERID enum value | ms_mascotoptions | |
MS_REVIEW_COL_USERNAME enum value | ms_mascotoptions | |
NUMERICAL_VALUE_STORAGE enum name | ms_mascotoptions | |
operator=(const ms_mascotoptions &right) | ms_mascotoptions | |
PERC_EXE_RT enum name | ms_mascotoptions | |
PERC_EXE_RT_FORCE_OFF enum value | ms_mascotoptions | |
PERC_EXE_RT_FORCE_ON enum value | ms_mascotoptions | |
PERC_EXE_RT_USE_DEFAULT enum value | ms_mascotoptions | |
setAlwaysCreateDat28ResultsFile(const bool value) | ms_mascotoptions | |
setAlwaysEnableAutoDecoySearch(const bool value) | ms_mascotoptions | |
setAutoSelectCharge(const bool value) | ms_mascotoptions | |
setCacheDirectory(const char *value) | ms_mascotoptions | |
setCentroidWidth(const double value) | ms_mascotoptions | |
setCentroidWidthCount(const int value) | ms_mascotoptions | |
setCompressToolAA(const std::string value) | ms_mascotoptions | |
setCompressToolNA(const std::string value) | ms_mascotoptions | |
setCompressToolSL(const std::string value) | ms_mascotoptions | |
setCrawlerNumPeaksPer100Da(const int value) | ms_mascotoptions | |
setCreateLegacyModAndSubstitutionFiles(const bool value) | ms_mascotoptions | |
setCreatePipThreadBlockSize(const int blockSize) | ms_mascotoptions | |
setCreatePipThreads(const int nThreads) | ms_mascotoptions | |
setDechargeFragmentPeaks(const int maxCharge) | ms_mascotoptions | |
setDecoyTypeNoEnzyme(const int value) | ms_mascotoptions | |
setDecoyTypeSpecific(const int value) | ms_mascotoptions | |
setDefaultDelimiter(const char *delim) | ms_customproperty | |
setDefaultTargetFDRPercentage(const int index) | ms_mascotoptions | |
setDisplayNonSignificantMatches(const int value) | ms_mascotoptions | |
setEmailErrorsEnabled(const bool value) | ms_mascotoptions | |
setEmailFromTextName(const char *str) | ms_mascotoptions | |
setEmailFromUser(const char *str) | ms_mascotoptions | |
setEmailPassword(const char *str) | ms_mascotoptions | |
setEmailProfile(const char *str) | ms_mascotoptions | |
setEmailService(const char *str) | ms_mascotoptions | |
setEmailTimeOutPeriod(const int value) | ms_mascotoptions | |
setEmailUsersEnabled(const bool value) | ms_mascotoptions | |
setErrMessageEmailTo(const char *str) | ms_mascotoptions | |
setErrorLogFile(const char *str) | ms_mascotoptions | |
setErrTolMaxAccessions(const int value) | ms_mascotoptions | |
setExecAfterSearch(const int num, std::string value) | ms_mascotoptions | |
setFeatureTableLength(const int value) | ms_mascotoptions | |
setFeatureTableMinScore(const double value) | ms_mascotoptions | |
setForkForUnixApache(const bool value) | ms_mascotoptions | |
setFormVersion(const char *str) | ms_mascotoptions | |
setGetSeqBlastAccession(const ms_blastaccession *value) | ms_mascotoptions | |
setGetSeqJobIdFile(const char *str) | ms_mascotoptions | |
setICATFilter(const char *filterString) | ms_mascotoptions | |
setICATHeavy(const char *modName) | ms_mascotoptions | |
setICATLight(const char *modName) | ms_mascotoptions | |
setICATQuantitationMethod(const char *methodName) | ms_mascotoptions | |
setIgnoreDupeAccession(const unsigned int index, const std::string value) | ms_mascotoptions | |
setIgnoreIonsScoreBelow(const double value) | ms_mascotoptions | |
setIntensitySigFigs(const int value) | ms_mascotoptions | |
setInterFileBasePath(const char *str) | ms_mascotoptions | |
setInterFileRelPath(const char *str) | ms_mascotoptions | |
setIonsDecimalPlaces(const int value) | ms_mascotoptions | |
setIteratePMFIntensities(const bool value) | ms_mascotoptions | |
setLabelAll(const bool value) | ms_mascotoptions | |
setLastQueryAscFile(const char *str) | ms_mascotoptions | |
setLogoImageFile(const char *str) | ms_mascotoptions | |
setMailTempFile(const char *str) | ms_mascotoptions | |
setMailTransport(const int value) | ms_mascotoptions | |
setMascNodeCtrlFile(const char *str) | ms_mascotoptions | |
setMascotCmdLine(const char *str) | ms_mascotoptions | |
setMascotControlFile(const char *str) | ms_mascotoptions | |
setMascotFileProcessingThreads(const int value) | ms_mascotoptions | |
setMascotJobIdFile(const char *str) | ms_mascotoptions | |
setMascotMessage(const char *str) | ms_mascotoptions | |
setMassDecimalPlaces(const int value) | ms_mascotoptions | |
setMatchOppositeCrosslinkPairs(const bool value) | ms_mascotoptions | |
setMaxConcurrentSearches(const int value) | ms_mascotoptions | |
setMaxDatabases(const int value) | ms_mascotoptions | |
setMaxDescriptionLen(const int value) | ms_mascotoptions | |
setMaxEtagMassDelta(const double value) | ms_mascotoptions | |
setMaxEtVarMods(const int value) | ms_mascotoptions | |
setMaxIntactCrosslinkPeptides(const int value) | ms_mascotoptions | |
setMaxNumPeptides(const int value) | ms_mascotoptions | |
setMaxPepModArrangements(const int value) | ms_mascotoptions | |
setMaxPepNumModifiedSites(const int value) | ms_mascotoptions | |
setMaxPepNumVarMods(const int value) | ms_mascotoptions | |
setMaxQueries(const int value) | ms_mascotoptions | |
setMaxSearchesPerUser(const int value) | ms_mascotoptions | |
setMaxSequenceLen(const int value) | ms_mascotoptions | |
setMaxVarMods(const int value) | ms_mascotoptions | |
setMinEtagMassDelta(const double value) | ms_mascotoptions | |
setMinPepLenInPepSummary(const int value) | ms_mascotoptions | |
setMinPepLenInSearch(const int value) | ms_mascotoptions | |
setMonitorEmailCheckFreq(const int value) | ms_mascotoptions | |
setMonitorLogFile(const char *str) | ms_mascotoptions | |
setMonitorPidFile(const char *str) | ms_mascotoptions | |
setMonitorTestTimeout(const int value) | ms_mascotoptions | |
setMoveOldDbToOldDir(const bool value) | ms_mascotoptions | |
setMudpit(const int value) | ms_mascotoptions | |
setMudpitSwitch(const double value) | ms_mascotoptions | |
setNoResultsScript(const char *str) | ms_mascotoptions | |
setNTIUserGroup(const char *str) | ms_mascotoptions | |
setNTMonitorGroup(const char *str) | ms_mascotoptions | |
setPepSearchTool(const std::string value) | ms_mascotoptions | |
setPercolator(const bool value) | ms_mascotoptions | |
setPercolatorExeFlags(const char *value) | ms_mascotoptions | |
setPercolatorFeatures(std::string value) | ms_mascotoptions | |
setPercolatorMinQueries(const int value) | ms_mascotoptions | |
setPercolatorMinSequences(const int value) | ms_mascotoptions | |
setPercolatorTargetRankRelativeThreshold(const double threshold) | ms_mascotoptions | |
setPercolatorTargetRankScoreThreshold(const int threshold) | ms_mascotoptions | |
setPercolatorUseProteins(const bool value) | ms_mascotoptions | |
setPercolatorUseRT(const bool value) | ms_mascotoptions | |
setPreceedingComments(const std::string &comments) | ms_customproperty | |
setPrecursorCutOutLowerLimit(const double value) | ms_mascotoptions | |
setPrecursorCutOutUpperLimit(const double value) | ms_mascotoptions | |
setPropertyName(const int index, const char *name) | ms_customproperty | |
setPropValBoolByName(const char *name, const bool value, const bool bFirstPlace=false) | ms_customproperty | |
setPropValCharByName(const char *name, const char value, const bool bFirstPlace=false) | ms_customproperty | |
setPropValFloatByName(const char *name, const double value, const bool bFirstPlace=false) | ms_customproperty | |
setPropValInt64ByName(const char *name, const INT64 value, const bool bFirstPlace=false) | ms_customproperty | |
setPropValIntByName(const char *name, const int value, const bool bFirstPlace=false) | ms_customproperty | |
setPropValStringByName(const char *name, const char *value, const bool bFirstPlace=false) | ms_customproperty | |
setPropValStringByNumber(const int index, const char *value) | ms_customproperty | |
setProteinFamilySwitch(const int value) | ms_mascotoptions | |
setProteinsInResultsFile(const int value) | ms_mascotoptions | |
setProxyPassword(const char *str) | ms_mascotoptions | |
setProxyServer(const char *str) | ms_mascotoptions | |
setProxyType(const std::string &value) | ms_mascotoptions | |
setProxyUsername(const char *str) | ms_mascotoptions | |
setRemoveOldIndexFiles(const bool value) | ms_mascotoptions | |
setReportBuilderColumnArrangement(const int index, const std::string str) | ms_mascotoptions | |
setReportNumberChoice(const int index, const int value) | ms_mascotoptions | |
setRequireBoldRed(const bool value) | ms_mascotoptions | |
setResfileCache(const char *value) | ms_mascotoptions | |
setResultsCache(const char *value) | ms_mascotoptions | |
setResultsFileFormatVersion(const char *value) | ms_mascotoptions | |
setResultsFullURL(const char *str) | ms_mascotoptions | |
setResultsFullURL_2(std::string value) | ms_mascotoptions | |
setResultsPerlScript(const char *str) | ms_mascotoptions | |
setResultsPerlScript_2(std::string value) | ms_mascotoptions | |
setReviewColDisplay(const MS_REVIEW_COL index, const bool value) | ms_mascotoptions | |
setReviewColWidth(const MS_REVIEW_COL index, const int value) | ms_mascotoptions | |
setSaveEveryLastQueryAsc(const bool flag) | ms_mascotoptions | |
setSaveLastQueryAsc(const bool flag) | ms_mascotoptions | |
setSearchLogFile(const char *str) | ms_mascotoptions | |
setSearchSubmitAcceptedFileTypes(const std::string value) | ms_mascotoptions | |
setSearchSubmitDefaultPeptideCharge(const std::string value) | ms_mascotoptions | |
setSearchSubmitMode(const std::string value) | ms_mascotoptions | |
setSearchSubmitOutputFormat(const std::string value) | ms_mascotoptions | |
setSectionAvailable(const bool value) | ms_mascotoptions | |
setSelectSwitch(const int value) | ms_mascotoptions | |
setSendmailPath(const char *str) | ms_mascotoptions | |
setShowAllFromErrorTolerant(const bool value) | ms_mascotoptions | |
setShowSubsets(const bool value) | ms_mascotoptions | |
setShowSubsets(const double value) | ms_mascotoptions | |
setSigThreshold(const double value) | ms_mascotoptions | |
setSiteAnalysisMD10Prob(const double value) | ms_mascotoptions | |
setSortUnassigned(const std::string newValue) | ms_mascotoptions | |
setSpectraPerLibraryBlock(const int value) | ms_mascotoptions | |
setSpectrumViewerColourSchemeString(const std::string &name, const std::string &str, bool doCheck=true) | ms_mascotoptions | |
setSpectrumViewerDefaultColourSchemeName(const std::string &name) | ms_mascotoptions | |
setSplitDataFileSize(const int value) | ms_mascotoptions | |
setSplitNumberOfQueries(const int value) | ms_mascotoptions | |
setStoreModPermutations(const bool value) | ms_mascotoptions | |
setSVGSpectrumSwitch(const int value) | ms_mascotoptions | |
setTargetFDRPercentage(const int index, const double value, const bool makeDefault=false) | ms_mascotoptions | |
setTaxBrowserUrl(const std::string value) | ms_mascotoptions | |
setTestDirectory(const char *str) | ms_mascotoptions | |
setUniqueJobStartNumber(const int value) | ms_mascotoptions | |
setUnixDirPerm(const int value) | ms_mascotoptions | |
setUnixWebUserGroup(const int value) | ms_mascotoptions | |
setUseHTTPProxyForFTP(const bool value) | ms_mascotoptions | |
setUseHTTPProxyForHTTPS(const bool value) | ms_mascotoptions | |
setVmemory(const INT64 value) | ms_mascotoptions | |
uncommentProp(const int index, const char *delimeter=0) | ms_customproperty | |
~ms_customproperty() | ms_customproperty | |
~ms_mascotoptions() | ms_mascotoptions | |