The source code for these examples are in the 'examples' directory. For details on how to compile and run these examples see:

Description	Perl	C++	Java	Python	C#
Testing peptides for quantifiability	tools_quant_helper.pl			tools_quant_helper.py	tools_quant_helper.cs
For using statistical routines	tools_stats.pl			tools_stats.py	tools_stats.cs
For calculating the Shapiro-Wilk W test	tools_shapiro_wilk.pl			tools_shapiro_wilk.py	tools_shapiro_wilk.cs
Extracting peptide ratios from a Reporter or Multiplex file	resfile_ms2quantitation.pl	-	resfile_ms2quantitation.java	resfile_ms2quantitation.py	resfile_ms2quantitation.cs
Converting ms_ms2quantitation to ms_customquantitation	resfile_ms2quant_to_custom.pl	-	-	resfile_ms2quant_to_custom.py	resfile_ms2quant_to_custom.cs
Basic usage of ms_customquantitation	resfile_customquantitation.pl	-	resfile_customquantitation.java	resfile_customquantitation.py	resfile_customquantitation.cs
Usage of ms_ms1quant_time_align	-	-	-	display_quant_time_align.py	-