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Posted by Ville Koskinen (May 15, 2023)

How old is the software in that publication?

Most proteomics data analysis requires complex and sophisticated software. When you read the methods section of a journal article, it should state the software name and version number, as this is the minimum required for reproducibility of the data analysis. Often it is useful to also know how old the software package is. If it’s Mascot Server, there is now [...]

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Posted by Ville Koskinen (April 14, 2020)

Human Proteome Project data interpretation guidelines

The Human Proteome Project (HPP) data interpretation guidelines were recently updated. Many of the guidelines are good practice and common sense in any proteomics study where reliable protein identification is critical, not just when studying the human proteome. The guidelines are easy to meet using Mascot Server 2.7. Core guidelines The full list consists of 9 guidelines. The first one [...]

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