Mascot: The trusted reference standard for protein identification by mass spectrometry for 25 years

Help & tutorials

Getting started

Preparing raw data for Mascot

Submitting a database search

Modifications

Results reports

Interpreting results

Scoring of proteins and peptides

Refining results with machine learning

Automation with Mascot Daemon

Quantitation of proteins and peptides

General

iTRAQ and TMT

18O, metabolic, SILAC labelling

Label-free methods (LFQ)

Spectral libraries

Crosslinking

Top-down analysis

Mascot – General

Reference – Protein chemistry

Reference – Mass spectrometry